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A Dictionary of Epidemiology


http://www.kings.cam.ac.uk/~js229/glossary.html

This dictionary is the one used in the Epidemiology Short Course organized by the Wellcome Centre for the Epidemiology of Infectious Disease in the Univ of Oxford, UK. It is Copyright by the Univ of Cambridge 1994, 1995, 1996, 1997, 1998, 1999.

Dictionary definitions are always prone to dispute; the guiding principle here is to record the usages of groups in Oxford, Cambridge, and Warwick and of the course. Thus I've included some terms from Immunology and what we call classical epidemiology, but the chief perspective here is that of ecological epidemiology. Many terms, such as distribution, are discussed only from this specialist perspective. I'd be pleased to hear your suggestions.

Jonathan Swinton 


Note: this document will move around in future; if you wish to bookmark it or make a link to it I would recommend you to refer to the entry page.


A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

A

Aetiology
(The study of) the causes of disease.

Acquired immunity
See immunity.

Aetiological fraction
The potential for a reduction in the outcome of disease if a risk factor is removed. If Ie is the number of people exposed to the risk factor of interest who have a disease and Io is the number of people exposed to the risk factor without disease, then the aetiological fraction is (Ie-Io)/Ie. Also known as the attributable fraction.

Age-structured model
A mathematical model which take into consideration the division of the host population into different age classes. Such models can used to consider the consequences of such factors as age-dependent infection, morbidity or mortality rates or of age-specific vaccination schedules.

Aggregation
A distribution of parasites among hosts is said to be aggregated, or overdispersed, if parasites are found to co-occur in particular hosts more often than if the parasites were distributed at random among all hosts.

A more precise test would be if the distribution differed significantly from a Poisson distribution; a good heuristic is whether the variance to mean ratio is bigger than unity (in appropriate units).

Macroparasites are typically aggregated in their host populations, so that the majority of hosts harbour few or no parasites while a few hosts harbour large parasite burdens. Aggregated distributions are often well described empirically by the negative binomial distribution.

Antenatal
The period between conception and birth. Same as prenatal.

Antibody
A protein produced in the blood of vertebrates following exposure to an antigen. The antibody binds specifically to the antigen and thus stimulates its inactivation by other parts of the immune system.

The major classes of antibody are immmunoglobulin A, or IgA, found predominantly in bodily secretions like saliva; IgM and IgG which are typically produced sequentially in response to microparasitic infections; and IgE which is often elevated in the response to helminth infections. Only IgG is able to cross the placenta to provide maternal immunity.

Antigen
A protein, typically foreign, that elicits a specific immune response.

Anthelmintic
A drug, for example praziquantal, used specifically against helminth or worm infections.

Arbovirus
A virus which uses Arthropods as vectors and is transmitted in their saliva to the definitive host. For example, yellow fever.

(From Arthropod borne virus.) 

Attributable fraction
The same as aetiological fraction.


B

B cell
A white blood cell which produces antibody.

Bacteraemia
The presence of bacteria in the blood.

Basic Reproductive Rate, Ratio
See Reproductive Ratio.

BIDE
Birth, Immigration, Death, Emigration: the four demographic processes which might act on a population compartment in a typical compartmental model.

Breakpoint
See transmission breakpoint.


C

Carrier
An individual who is infected but has no symptoms of disease.

There are two types of carrier state: silent carriers retain their infectiousness, while latent carriers are not infectious. For example, many of those infected with tuberculosis are silent carriers, while infection with herpes virus may create latent carriers.

Carrying capacity
The maximum number of individuals a habitat can sustainably support. Typically defined so as not to include losses from predation or disease.

Catalytic model
A (rather misleading name for a) type of compartmental model in which the force of infection is treated as a parameter to be estimated.

Case-control study
A study in which the risk factors of people with a disease are compared with those without a disease.

Chemotherapy
Drug treatment of a diseased individual.

Chemoprophylaxis
Drug treatment designed to prevent future occurrences of disease. Treatment may be chemotherapy as far as an individual is concerned but chemopropylactic for the population as a whole.

Classical epidemiology
Our term for the varieties of epidemiology primarily concerned with the statistical relationships between disease agents, both infectious and non-infectious; for example a study to establish the relative risk of lung Cancer associated with smoking.

We contrast this with ecological epidemiology.

Close contact infection
An infection which requires close contact, other than sexual contact, between susceptible and infectious individuals, for transmission.

CMV
Cytomegalovirus: a herpes virus which causes glandular fever (as does EBV).

Co-evolution
Changes in the genotypes of two or more species that are a direct consequence of the species' interaction with one another.

Cohort
A subsection of a population with a common feature, usually age. For example, all those individuals in the UK born in 1964 form a birth cohort.

Compartmental model
A mathematical model which divides hosts into different compartments according to their infectious state. A typical model for microparasites might be an SEIR model. Sometimes referred to as a prevalence model.

Contact rate
The rate at which susceptibles meet infecteds. Usually measured as individuals per unit time.

Contagious distribution
Same as an aggregated distribution.

Continuous time model
A model in which the system changes continuously over time. Derivatives (e.g. dY/dt) are the mathematical formalism for describing such continuous change. The differential equation which embodies a model provides the values of these derivatives at any particular time point; calculus or a computer can then be used to move the state of the model forwards in time.

Continuous models have the advantage over discrete time models in that they are more amenable to algebraic manipulation, although they are slightly harder to implement on a computer.

The same as a differential equation model.

CRS
Congenital rubella syndrome.

Cross-sectional study
Same as a horizontal study.

Crude birth rate
The number of live births in a year divided by the population size.

Crude death rate
The number of deaths in a year divided by the population size.


D

Definitive host
The host in which a parasite reproduces sexually.

Density-dependent
1) Effects whose intensity changes with increasing population density.

2) Effects whose intensity increases with increasing population density, for example a mortality which becomes very high near a carrying capacity. Effects which become less pronounced at higher population sizes (perhaps the reduction in fecundity caused by the difficulty of mating) are sometimes called inverse density dependent. Density dependent effects are often a cause of nonlinearity in a model.

Deterministic model
A mathematical model in which the parameters and variables are not subject to random fluctuations, so that the system is at any time entirely defined by the initial conditions chosen. Contrast with a stochastic model.

Dictionary
A device for starting futile arguments over definitions.

Differential equation
The mathematical formulation corresponding to a continuous model; an equation involving derivatives.

Difference equation
The mathematical formulation corresponding to a discrete time model.

Dioecious
Having separate sexes, opposite of monoecious.

Direct life cycle
A life cycle in which a parasite is transmitted directly from one host to the next without an intermediate host or vector of another species.

Discrete time model
A model in which the system jumps from one state to the next at fixed intervals or timesteps. These difference models are simple to understand but often difficult to analyse; Contrast continuous time models.

The parameters in such a model refer to the amount of change over the finite timestep; they are sometimes referred to as finite rates.

In a (rather precise) sense, a differential equation is what you eventually get from a difference equation when you let the timestep get smaller and smaller and smaller.

Disease
The debilitating effects on a host of infection by a parasite.

Distribution
The pattern by which parasite numbers are partitioned among available hosts. If the fraction of the population who have i parasites is p(i) then the distribution is the set of numbers p(0),p(1), p(2), ... . Summary statistics of this distribution include prevalence (1-p(0)) and mean intensity ( p(1)+ 2p(2)+ 3p(3)+...). Useful distributions include the Poisson and negative binomial.


E

EBV
Epstein-Barr virus: a herpes virus which causes glandular fever (as does CMV) and some Cancers.

Ecological epidemiology
A branch of epidemiology which views disease as a result of the ecological interactions between populations of hosts and parasites; what we do. We contrast this with classical epidemiology.

Efficacy
An index of the potency of a drug or disease treatment.

For an anthelmintic, usually estimated as the proportion of the worm burden in a host killed by a single dose or short-term course of the treatment. For a vaccine, efficacy is the percentage of persons who are protected by the vaccine.

Specifically, if Iv is the incidence in vaccinated individuals and Iu then vaccine efficacy is v=1-Iv/Iu. Note that this may include the effects of protection due to herd immunity, and so is not the same as same as Immunogenicity, even if the presence of an immune reaction always indicated individual protection.

ELISA
A technique using the antigen binding properties of antibodies to detect specific antigens or antibodies. Visualisation is typically made possible by enzyme induced colour formation.

From Enzyme Linked ImmunoSorbent Assay.

Endemic
A term to describe levels of infection which do not exhibit wide fluctuations through time in a defined place.

For microparasites like measles, the term is used slightly differently to indicate an infection which can persist in a population in the long term without needing to be reintroduced from outside.

Stable endemicity is where the incidence of infection or disease shows no secular trend for increase or decrease.

Endemic fadeout
Parasite extinction occurring because endemic levels are so low that it is possible for small stochastic fluctuations to remove all parasites. Contrast epidemic fadeout.

Epidemic
A rapid increase in the levels of an infection. Typical of the microparasitic infections (with long lasting immunity and short generation times) an epidemic is usually heralded by an exponential rise in the number of cases in time and a subsequent decline as susceptible numbers are exhausted.

Epidemics may arise from the introduction of a novel Pathogen (or strain) to a previously unexposed (naive) population or as a result of the regrowth of susceptible numbers some time after a previous epidemic due to the same infectious agent. Contrast endemic, pandemic.

Epidemic fadeout
Parasite extinction occurring because numbers are so low immediately following an epidemic that it is possible for small stochastic fluctuations to remove all parasites. Contrast endemic fadeout.

Epizootic
An epidemic in an animal host population. (But see Nature, 368, 284, (1994)) 

Epiphytotic
An epidemic in a plant host population.

Equilibrium
A state in which a system is not changing. A population size might be at a static equilibrium at which nothing is happening (there are no births or deaths) or a dynamic equilibrium at which different processes are balanced (there are the same numbers of births and deaths). More generally, the state to which a system eventually evolves, for example sustained periodic oscillations, might be called an equilibrium.

Exponential decay
A decline in which the rate of decay is always proportional to the amount of material remaining; the constant of proportionality is the rate constant.

Exponential growth
An increase in which the rate of growth is always proportional to the amount of material remaining; the constant of proportionality is the rate constant.

Exposure odds ratio
See Odds ratio.


F

Fecundity
The capacity to produce offspring; the rate of offspring production.

Force of infection
The per capita rate at which susceptibles are infected.


H

HAV/HBV/HCV
Hepatitis A, B and C virus. These very different viruses all cause the liver disease hepatitis. Hepatitis B and C are blood borne, while Hepatitis A is an enterovirus which is faeco-orally transmitted. Other known hepatitis viruses include Hepatitis D and Hepatitis E.

Helminths
Worms, in particular the five groups of parasitic worms: Monogeneans (flukes), Digeneans (flukes, schistosomes), Cestodes (tapeworms), Nematodes (roundworms) and Acanthocephalans (spiny-headed worms).

Herd immunity
Specifically, the mechanism by which an infection may be eradicated from a population although some susceptibles still remain, because the remainder of the population is immune and thus transmission is reduced.

More generally, the Immunological status of a population of hosts and its effect on transmission rates.

HI test
Haemagglutination inhibition test, a serological test used to detect antibodies specific to a particular family of viruses which possess the ability to agglutinate red blood cells e.g. measles, rubella and influenza.

HIB
Haemophilus influenzae B.

HIV
Human Immunodeficiency virus: the cause of Acquired Immune Deficiency Syndrome (AIDS).

HPV
Human papillomavirus, causing genital warts and genital Cancers.

HSV
Herpes simplex virus. Types one and two, HSV-I and HSV-II, are among the causes of cold sores and genital ulcers.

Holoendemic
An infection whose prevalence is fairly uniform throughout a region, country or continent.

Often used in the malaria literature.

Horizontal survey
A study of a community, perhaps stratified by age, sex, ethnicity etc., but at one point in time or over a short time interval.

Although a snapshot, horizontal surveys of prevalence and intensity within different age classes of a community can nevertheless provide valuable information on the rate at which hosts acquire infection through time, provided that the host and parasite populations have remained approximately stable for a period of time (ie stable endemicity). Same as cross-sectional study, converse of longitudinal study.

Horizontal transmission
Transmission occurring generally within a population, but not including vertical transmission.

Hypoendemic
A term from the malaria literature used to mean (roughly) an area with little transmission.


I

Immunity
1) A state in which a host is not susceptible to infection or disease, or

2) the mechanisms by which this is achieved. Immunity is achieved by an individual through one of three routes: natural or innate immunity Genetically inherited or acquired through vaccination. Also termed specific immunity, resistance or specific resistance.

Specific immunity is divided into cellular immunity acting via the direct involvement of T cells and humoral immunity involving antibodies and B cells.

Immunogenicity
The ability of a vaccine to stimulate the immune system, as measured by the proportion of individuals who produce specific antibody or T cells, or the amount of antibody produced, say. Not the same as efficacy.

Immunopathology
Damage to the host caused by its own immune response against a Pathogen.

Immunosuppression
A reduction in the capacity of the immune system. Caused by infection (eg HIV), drug treatment, pregnancy and malnutrition among others. Immunosuppressed individuals are commonly referred to as Immunocompromized. 

Incidence
The rate at which new cases of infection arise in a population. Classically measured as an attack rate.

Incubation period
The time that elapses between infection and the appearance of symptoms of a disease. Not the same as the latent period.

Indirect life cycle
A life cycle which requires one or more intermediate hosts before the definitive host species is reinfected. Compare direct, nondirect.

Indirect transmission
Transmission of a parasite through an indirect life cycle.

Infection
The presence of a parasite within a host where it may or may not cause disease.

Infected
n., A host who has an infection.

Infectious period
The time period during which infecteds are able to transmit an infection to any susceptible host or vector they contact. Note that the infectious period may not necessarily be associated with symptoms of the disease.
Inoculum
The amount of parasite to which an individual host is exposed at transmission.

Instantaneous rate
In a short time interval (e.g a week), the number of events (e.g. births in the UK) taking place during the interval is approximately proportional to the length of the interval. The constant of proportionality is the rate at which these events occur. This argument becomes more and more exact as the length of the time interval becomes shorter and shorter. When the time interval has shrunk to an instant, the rate has become an `instantaneous rate'. A bad term; just call it a rate.

Intensity
1) (Traditional) The mean parasite burden within all the infected members of the host population. Also called mean abundance.

2) (Newer) The mean parasite burden within both infected and uninfected hosts.

It is important to indicate which usage is adopted, since they give different statistics, unless the prevalence is 100%. Macroparasites, and infections like malaria, are usually measured in terms of intensity.

Intermediate host
See vector.

Inverse density dependence
See density dependence.


L

Latent period
The time from infection to when the individual is infectious to others. In helminths it is termed the pre-patent period. Not the same as the incubation period.

Life expectancy
Longevity, the average length of life of individuals in a population.

Likelihood
Given some data (for example maternal antibody levels), and a model for how a process supposedly generating it occurs, (for example, exponential decay with rate m ), and for how variance is likely to occur in observations of the process (for example sampling error), the likelihood that a particular model (ie a particular m plus the error in observation can generate the observed data. Picking the parameter value which is most likely to have generated the observed data is the method of maximum likelihood.

Linear
A process is linear if doubling the starting conditions doubles the outcome. For example, the number of new schistosome infections establishing in mice is directly proportional to the number of cercaria the mice are exposed to, over a certain range. Outside this range, the response is nonlinear: there is no longer a direct proportionality.

Linear differential equations are ones whose solutions are linear. This property allows us to solve linear differential equations completely: most nonlinear differential equations can't be solved analytically.

Longitudinal study
A study taking place over time. If individuals are followed, this is a longitudinal cohort study. If individuals are not followed, but classes (usually age classes) are restudied, this is a longitudinal cross-sectional study.

The converse of a horizontal study.


M

Mass action transmission
Transmission of infection which occurs at a rate directly proportional to the number or density of both susceptibles and infecteds present.

Some authors reserve the name mass action for transmission processes of the form b X Y/N, which we associate with STD-type transmission, and describe transmission rates of the form b X Y, as pseudo-mass action; the two are equivalent if the population size is unchanging.

Macroparasites
Typically, the parasitic helminths and arthropods. In general, parasites which do not multiply within their definitive hosts but instead produce transmission stages (eggs and larvae) which pass into the external environment. Immune responses elicited against macroparasites generally depend on the number of parasites present in a given host and tends to be of a relatively transient nature. The key epidemiological measurement is generally the number of parasites per host.

Such parasites are often found in a highly aggregated distribution.

Contrast microparasites.

Maternal immunity
Immunity for a neonate provided by IgG antibody generated by a mother and passed across the placenta to the unborn offspring. This provides short lived protection (with a typical half life of 3-6 months) to the neonate. Also known as immunity.

Mathematical model
A formal framework to convey ideas about the components of a host-parasite interaction. Construction requires three major types of information: (a) a clear understanding of the interaction within the individual host between the infectious agent and the host, (b) the mode and rate of transmission between individuals, and (c) host population characteristics such as demography and behaviour.

Mathematical models can aid exploration of the behaviour of the system under various conditions from which to determine the dominant factors generating observed patterns and phenomena. They also aid data collection and interpretation and parameter estimation, and provide tools for identifying possible approaches to control and for assessing the potential impact of different intervention measures.

Mesoendemic
A term from the malaria literature used to mean (roughly) an area with some transmission.

Metazoans
Multicellular animals.

Microparasites
Typically, viruses, bacteria, fungi and protozoa. More generally, parasites which multiply within their definitive hosts. Microparasites are characterized by small size, short generation times, and a tendency to induce immunity to reinfection in those hosts that survive. The duration of infection is usually short in relation to the lifespan of the host, but there are important exceptions, such as the slow viruses. The key epidemiological variable, by contrast with macroparasites, is whether or not the individual host is infected.

Molluscicides
Chemical substances which kill snails or other molluscs.

Monoecious
Male and female sexual apparatus present in the same individual. Same as hermaphrodite; opposite of dioecious.

Morbidity
State of ill-health produced by a disease.

Mortality rate
The per capita death rate in a population. The mortality rate is the reciprocal of the population life expectancy.

Multiple infection
An infection in which an individual is infected by parasites of more than one species.


N

Negative binomial distribution
A distribution which is parameterised by a mean m and an aggregation parameter k which is large when aggregation is small; in fact as k becomes large, the negative binomial distribution approximates the Poisson distribution.

Notifiable disease
Diseases, usually of an infectious nature, whose occurrence is required by law to be made known to a health officer or local government authority.

Non-direct transmission
A mode of transmission that differs in some mysterious way from indirect transmission; we don't make a distinction in this course.

Nonlinear
Not linear.


O

Odds ratio
A comparison of the presence of a risk factor for disease in a sample of diseased subjects and non diseased controls. The number of people with disease who were exposed to a risk factor (Ie) over those with disease who were not exposed (Io) divided by those without disease who were exposed (Ne) over those without who were not exposed (No). Thus OR=(Ie/Io)/(Ne/No)= Ie No / Io Ne. This measure should be used for case control studies where we retrospectively look at risks in those with and without disease. Also known as exposure odds ratio.

Overdispersion
See aggregation 


P

Pandemic
An epidemic widely distributed in space.

Panzootic
A widely distributed epizootic, often one affecting more than one host species.

Passive immunity
Immunity which has been acquired through the transfer of maternal or other antibodies. Passive immunization does not induce Immunological memory.

Parasite
1) Any disease causing organizm. 2) An organizm exhibiting an obligatory dependence on another organizm, its host, which is detrimental to the host.

Pathogen
Same as a parasite.

Pathogenicity
The degree to which a Pathogen debilitates its host.

Perinatal
Between the 28th week of pregnancy and the end of the first week of life.

Per capita rate
A rate which is proportional to the number of individuals in a population.

Poisson distribution
The distribution which arises when parasites are distributed at random among hosts.

Postnatal
Subsequent to (and within 1 year of) childbirth.

Pre-patent period
The time from infection until when a female starts to produce eggs in helminth infections, equivalent to latent period in micro-parasitic infections.

Predator
An animal that kills its prey and then feeds on it to subsist until the next kill.

Prevalence
The proportion of the host population infected (or with some marker of past or present infection) at a particular time.

Prevalence models
Prevalence models are compartmental models dividing the host population into, for example, susceptible, latent, infectious and immune individuals.

Prospective study
A study in which people are initially enrolled and then followed up at subsequent times.

Protozoan
A unicellular eukaryote.


Q

Quiescence
A period during which an infection is present but not active within a host: for example the period between an acute attack of chickenpox (varicella) and a subsequent recrudescence of shingles (zoster); not the same as latency.


R

Rate
The number of events happening divided by the length of time over which they happen. A rate of change is the amount of change happening in a interval divided by the length of the interval; for small intervals the rate of change might be given by a simple rule (a differential equation).

Recrudescence
Reappearance of disease in a host whose infection has been quiescent.

Reproductive ratio
(1) Basic reproductive ratio, Ro, a dimensionless parameter which encapsulates the biological details of different transmission mechanisms. For microparasites, Ro, is defined as the average number of secondary cases of infection to which one primary case gives rise throughout its infectious period if introduced into a defined population consisting solely of susceptible individuals.

For macroparasites, Ro, is the average number of female offspring (or just offspring in the case of hermaphroditic species) produced throughout the lifetime of a mature female parasite, which themselves achieve reproductive maturity in the absence of density-dependent constraints on the parasite establishment, survival or reproduction.

Also known as the basic reproduction rate, number.

(2) Effective reproductive ratio, R, The number of secondary cases (microparasites) or female offspring (macroparasites) produced in a host population not consisting entirely of susceptible individuals (microparasites) or within which density dependent constraints limit parasite population growth (macroparasites). Under conditions of stable endemic infection, R=1. 

Relative risk (RR)
The proportion of diseased people amongst those exposed to the relevant risk factor divided by the proportion of diseased people among those not exposed to the risk factor. This should be used in those cohort studies where those with and without disease are followed to observe which individuals become diseased.

Resistance
1) The reduction, due to Genetic selection, of susceptibility of a parasite or its vector to chemotherapy.

2) The ability of a host to resist a Pathogen. Compare immunity.

Retrospective study
A study in which people are enrolled and then have their history of risks, infections or disease measured.


S

SEIR model
A class of compartmental prevalence models, with compartments Susceptible, Latent (Exposed), Infectious and Recovered. Takes its name from a common notation. In the notation used in the course, this would be an XHYZ model. Many permutations possible.

Sensitivity
The ability of a test to work on people you know have the infection. More precisely TP/(TP+FN), where TP is the number of true positives and FN is the number of false negatives 

Serology
The study of antigen-antibody reactions. More generally, the use of serotype data to infer an individual's history of infection.

Seropositive
n., an individual whose serotype suggests that they have experienced infection in the past.

Seroprevalence
The proportion of a population who are seropositive.

Serotype
The range of antibodies which an individual possesses, usually based on sampling from blood serum or saliva.

Different strains of a Pathogen can sometimes be distinguished by the different antibodies they induce in a host, or with which they can be made to react in vitro; thus the word serotype has also come to be applied to a particular strain (`the virulent serotype'). This is the more common clinical usage.

The range of antibodies used to define a serotype obviously depends on those available to the researcher. Sometimes, as for measles, the presence of a known antibody within the Serum of an individual correlates extremely well with the clinical observation that that individual is protected against any further infections.

But sometimes, as for malaria, there is as yet no definite relationship between a given serotype and the presence of a functional immunity, which may make the use of the word serotype unhelpful when trying to distinguish between different parasites for the purposes of understanding transmission.

Specificity
The ability of a test to fail on people you know don't have the infection. More precisely TN/(TN+FP), where TN is the number of true negatives and FP is the number of false positives 

Stochastic model
A mathematical model which takes into consideration the presence of some randomness in one or more of its parameters or variables. The predictions of the model therefore do not give a single point estimate but a probability distribution of possible estimates. Contrast with deterministic.

We might distinguish demographic stochasticity which arises from the discreteness of individuals and individual events such as birth, and environmental stochasticity arising from more-or-less unpredictable interactions with the outside world.

Subclinical infection
An infection in which symptoms are sufficiently mild or inapparent to escape diagnosis other than by positive confirmation of the ability to transmit the infection or serologically.

STD
Sexually transmitted disease.

Susceptible
An individual accessible to or liable to infection by a Pathogen.

Symptom
A condition of the body reported by an individual when suffering from a disease; here used more loosely to include signs: any evidence used in diagnosis or identification of infected individuals.


T

T cell
A white blood cell responsible for Cell-Mediated immunity in particular and Immunoregulation in general.

Total fertility rate (TFR)
The number of children an average women would have assuming that she lives her full reproductive lifetime.

Transmission
The process by which a Pathogen passes from a source of infection to a new host. There are two major types: horizontal and vertical transmission. The majority of transmission processes operate horizontally.

Transmission breakpoint
A critical average worm burden below which the mating frequency is too low to maintain a dioecious parasite species.

Transmission threshold
Occurs for a parasite when the basic reproductive rate Ro is equal to 1. Below this threshold level the disease is unable to maintain itself within the host population. Typically, for directly transmitted parasites there is a transmission threshold for the host population size.

Type I mortality
A mortality schedule in which all hosts are assumed to live for a fixed number of years equal to the life expectancy.

Type II mortality
A mortality schedule in which all hosts are assumed to die at a constant rate. This constant rate is equal to the inverse of the life expectancy.


V

Vaccine
A drug intended to induce active artificial immunity against a Pathogen. Vaccines may be live or dead. Live vaccines are usually attenuated versions of the wildtype Pathogen, such as the MMR vaccines, which are strains of measles mumps and rubella viruses repeatedly passaged through cell lines until non-Pathogenic. Typically, live vaccines need only be given as a single dose to induce a full Immunological response, inducing specific memory.

Dead vaccines are either killed whole parasite, as with the Salk polio strain and pertussis vaccine, or some highly Immunogenic fraction of the parasite, as in toxoid vaccines. Killed vaccines and toxoids which do not multiply in the host must usually be administered in multiple doses to induce a full Immunological response.

Vaccination should be distinguished from passive immunization in which concentrated specific antibodies which can be used therapeutically to abrogate an ongoing infection or to provide short term protection (of the order of months), for example against hepatitis A. Passive immunization does not induce Immunological memory.

Vector
1) The intermediate hosts of parasites with indirect life cycles.

2) Anything which transmits parasites.

Vectorial capacity
In vector-borne infections such as malaria, the vectorial capacity is a concept analogous to the contact rate in directly-transmitted diseases. It is, thus, a function of (a) the vector's density in relation to its vertebrate host, (b) the frequency with which it takes blood meals on the host species, (c) the duration of the latent period in the vector, and (d) the vector's life expectancy.

Vertical transmission
Vertical transmission occurs when a parent conveys an infection to its unborn offspring, as occurs in syphilis in man or in many arboviruses of arthropods. Perinatal infection is a special form of vertical transmission.

Viraemia
The presence of virus in the blood.

Virion
A mature and infectious virus particle.

Virulence
(1) The case mortality rate of an infection. (2) The extent to which a Pathogen harms its host. These are different usages: what they have in common is that they refer to the effect on an already infected host, not to the degree of transmissibility to a subsequent susceptible.

VZV
Varicella-zoster virus: a herpes virus which causes chickenpox (varicella) and shingles (herpes-zoster).



W

Worm burden
The number of worms an individual host carries. Sometimes directly measurable (Ascaris), sometimes only indirectly (schistosomiasis).



Z

Zoonosis
A parasite naturally transmitted between man and other vertebrate species 
 
 


Comments to Jonathan Swinton.



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